Basic Information
VIS ID
TVIS30009551
Fusion event
HIV-ASPH integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
62600291/61687732 (Hg38)
End
62600291/61687732 (Hg38)
Orient
+
Location type
Intronic
Target gene
ASPH
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-16-5p ; hsa-mir-921 ; hsa-mir-1-3p ; hsa-mir-1225-5p ; hsa-mir-939-5p ; hsa-mir-1343-5p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-4722-5p ; hsa-mir-6081 ; hsa-mir-7854-3p ; hsa-mir-8069 ; hsa-mir-4699-5p ; hsa-mir-4459 ; hsa-mir-6165 ; hsa-mir-4506 ; hsa-mir-4662b ; hsa-mir-4647 ; hsa-mir-4426 ; hsa-mir-6734-5p ; hsa-mir-4728-5p ; hsa-mir-6073 ; hsa-mir-3175 ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6738-5p ; hsa-mir-5194 ; hsa-mir-423-5p ; hsa-mir-1914-3p ; hsa-mir-3184-5p ; hsa-mir-3174 ; hsa-mir-6755-5p
Nearest miRNA
hsa-mir-124-1/Upstream/18791457; hsa-mir-10400/Downstream/27056;
Nearest TSS
ENST00000518652/Upstream/3032; ENST00000523042/Downstream/1967;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/547860, chr8-CpG: 102/Downstream/26265
Upstream sequence
CAGGCAGAATCCCTGACAGTCCTTCAAATAATCTTCAGTACAAGACAGTAACTGGTTTCACATTGATTCTGCCATTAAAACATAGAAgaaatgtataata
Downstream sequence
aatcttaggaagattttcattcaaagtagtttgtagtaaagagatttatcactttaaaagctaaatgtttcttaactagaatatattatcagcaatattt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate