VISDB Viral Integration Site DataBase

VIS ID

TVIS30009555

Fusion event

HIV-MYBL1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr8

Cytoband

q13.1

Reference genome

Start

End

67501330/66589095 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-373-3p ; hsa-mir-221-3p ; hsa-mir-193b-3p ; hsa-mir-375 ; hsa-mir-155-5p ; hsa-mir-15a-5p ; hsa-mir-6512-5p ; hsa-mir-4693-3p ; hsa-mir-592 ; hsa-mir-597-5p ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-5192 ; hsa-mir-574-5p ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-4275 ; hsa-mir-6760-5p ; hsa-mir-4433b-3p ; hsa-mir-6873-5p ; hsa-mir-185-5p ; hsa-mir-4306 ; hsa-mir-4644 ; hsa-mir-190a-3p ; hsa-mir-1304-3p ; hsa-mir-5011-5p ; hsa-mir-410-3p ; hsa-mir-1277-5p ; hsa-mir-3163 ; hsa-mir-548aw ; hsa-mir-1229-3p ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-3613-3p ; hsa-mir-455-5p ; hsa-mir-5000-5p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-3065-5p ; hsa-mir-4795-3p ; hsa-mir-3162-5p ; hsa-mir-126-5p ; hsa-mir-7845-5p

Nearest miRNA

hsa-mir-124-1/Upstream/2209838; hsa-mir-10400/Downstream/7959448;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/46339, chr8-CpG: 122/Downstream/23277

Upstream sequence

gcgacagtgtaagactccaacacaaaaagaaattaaaaaaaTGCTTCATATGGGTATGGAGTCTATTCTACTGGCTGCAGCAACTTCCCTCTAGATTTCA

Downstream sequence

GAATATACACTTATTCAACCAAATCTTTATGAGAACAGATTTTAGATAGTGAGTTCTAAAAAGAAAATAACTTTCTTCCTTTTTAATGCAAAATATTCAT