Basic Information
VIS ID
TVIS30009557
Fusion event
HIV-CPA6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
68408743/67496508 (Hg38)
End
68408743/67496508 (Hg38)
Orient
-
Location type
Intronic
Target gene
CPA6
miRNAs that regulate target gene
hsa-mir-124-3p
Nearest miRNA
hsa-mir-124-1/Upstream/3117251; hsa-mir-10400/Downstream/7052035;
Nearest TSS
ENST00000518652/Upstream/43858; ENST00000526382/Downstream/236079;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/152693, chr8-CpG: 64/Downstream/455682
Upstream sequence
agcttttttgggatataattcacacaccttacaattcatccttttatagtgtgcaatttactgtgttttagtatatttacagagttgtgcaaccatcacc
Downstream sequence
actatatagtttatatatatatatatatatatatatatatatatatatatttattttattttttttttttgagatggagtgtctctctgttgcccaggct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate