Basic Information
VIS ID
TVIS30009558
Fusion event
HIV-CPA6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
68582530/67670295 (Hg38)
End
68582530/67670295 (Hg38)
Orient
+
Location type
Intronic
Target gene
CPA6
miRNAs that regulate target gene
hsa-mir-124-3p
Nearest miRNA
hsa-mir-124-1/Upstream/3291038; hsa-mir-10400/Downstream/6878248;
Nearest TSS
ENST00000518652/Upstream/217645; ENST00000526382/Downstream/62292;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/326480, chr8-CpG: 64/Downstream/281895
Upstream sequence
attggctcatggttccgcaggctgtacaggaaacataatggcttctggggaggcctcaggatactttccatcatggaggaaggtgagggggaagcaggca
Downstream sequence
ggtcttacctggccagagcaggaggcggcagggggaaggtgccacccacttttaaacaaccagatctcgtgagcacttactatcacgagagcagcactga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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