Basic Information
VIS ID
TVIS30009559
Fusion event
HIV-chr8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
70993089/70080854 (Hg38)
End
70993089/70080854 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/5701597; hsa-mir-10400/Downstream/4467689;
Nearest TSS
ENST00000518652/Upstream/9161; ENST00000520259/Downstream/47893;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/8201, chr8-CpG: 251/Downstream/321056
Nearby gene
PRDM14(No orient, 9527)
Nearest cancer related gene
PRDM14(OG, No orient, 9527)
Upstream sequence
GATTGTGGAGGTTGTGAGGTCATCCAGTTGTTTAATTTGAAAAACCGTTAAGTTGTTTAGGATCTTACTCTACTTTTGTTCTAAGAGTTTCTCAGAAGAT
Downstream sequence
TTGGACACATGCTATAGGGCTGTTAGTGGAGTTATTTCTTATTCTAGCCTTTAAGTACCAAACCCCTGAATTTTGGCTAAAGGCCGTTCATAAGCAATGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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