Basic Information
VIS ID
TVIS30009562
Fusion event
HIV-TRPA1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q21.11
Reference genome
GRCh37/hg19
Start
72998134/72085899 (Hg38)
End
72998134/72085899 (Hg38)
Orient
-
Location type
Intronic
Target gene
TRPA1
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-7-5p
Nearest miRNA
hsa-mir-124-1/Upstream/7706642; hsa-mir-10400/Downstream/2462644;
Nearest TSS
ENST00000518652/Upstream/10282; ENST00000523602/Downstream/110435;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/10111, chr8-CpG: 51/Downstream/165484
Nearby gene
TRPA1(No orient, 10315)
Upstream sequence
ttcctgttttcttttttattgttttatttcctcttcctggttaggttcaccttgtgcattttgttttaacctttactgatttggggaatgcgtattctac
Downstream sequence
tttttatttatttatttttttgagacagtcttgctctgtcgcccaggctggagtgcaatggtgtgatcttggctcaccgcaacctctgcctcccgggttc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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