Basic Information
VIS ID
TVIS30009563
Fusion event
HIV-STAU2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q21.11
Reference genome
GRCh37/hg19
Start
74455742/73543507 (Hg38)
End
74455742/73543507 (Hg38)
Orient
-
Location type
Intronic
Target gene
STAU2
miRNAs that regulate target gene
hsa-mir-122-5p
Nearest miRNA
hsa-mir-124-1/Upstream/9164250; hsa-mir-10400/Downstream/1005036;
Nearest TSS
ENST00000518652/Upstream/84720; ENST00000533978/Downstream/39323;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/94333, chr8-CpG: 123/Downstream/202711
Upstream sequence
aaattatacatcaataaggttgattaaaaCACTTAAGTGTAGTTATCTCTGACACAACTGAAGACACTAAGTCATGGTTTATATTTTGCATAATCATAAG
Downstream sequence
TAACCTCACAATTAACTAATTTCCAAGCAACTGTTACATTAGGAGCTTAACACCATTTGAATTTATTGTATGTGTTCAGATGTGTTTATCTGCCCTTGCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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