VISDB Viral Integration Site DataBase

VIS ID

TVIS30009566

Fusion event

HIV-ELOC integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr8

Cytoband

q21.11

Reference genome

Start

End

74868308/73956073 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-4424 ; hsa-mir-4724-5p ; hsa-mir-4678 ; hsa-mir-552-3p ; hsa-mir-200c-3p ; hsa-mir-200b-3p ; hsa-mir-429 ; hsa-mir-212-3p ; hsa-mir-132-3p ; hsa-mir-6780a-3p ; hsa-mir-6852-3p ; hsa-mir-3909 ; hsa-mir-4766-5p ; hsa-mir-146a-3p ; hsa-mir-512-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-769-3p ; hsa-mir-450b-3p ; hsa-mir-4279 ; hsa-mir-638 ; hsa-mir-4713-3p ; hsa-mir-6778-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-4740-3p ; hsa-mir-5683 ; hsa-mir-5571-5p ; hsa-mir-4539 ; hsa-mir-7158-3p

Nearest miRNA

hsa-mir-124-1/Upstream/9576816; hsa-mir-10400/Downstream/592470;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/76896, chr8-CpG: 37/Downstream/15926

Upstream sequence

ATTCATGGCCATCAGATGATATCAATTTGACATACATGGCATCAGGTCCTTCACAGCCACCATAGGTTTTCTCCTCTCCATCTAAAGTAAAGTAAGTAGT

Downstream sequence

GAAACAATTTTTGAGTCACACAGTGTACTAAAACTAAACAGGTTTggctgggcgcagtggctcacgcctgtaatcccagcactttggcaggccaatcacc