Basic Information
VIS ID
TVIS30009567
Fusion event
HIV-LOC102724858 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
77119961/76207726 (Hg38)
End
77119961/76207726 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC102724858
Nearest miRNA
hsa-mir-124-1/Upstream/1501979; hsa-mir-10400/Downstream/759042;
Nearest TSS
ENST00000518652/Upstream/667857; ENST00000603284/Downstream/196272;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/799537, chr8-CpG: 59/Downstream/474294
Nearby gene
LINC01111(No orient, 198928)
Upstream sequence
AAGGATGGATTGCAATTCTTCACCCTCAAAATGATGTTCTTTAAGTTGTGTTTGTTCTGAGATATCCCTATGCTGACTCTGTCATTCAACCAAATTCTGC
Downstream sequence
ATTGGTTTTGCTCCACTATCTTACACTGTCCTCTATGGGGACCTATGTGAGAACATTTATGTCCTAGTACTGAGATAAAGGtctctctctttctctctct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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