VISDB Viral Integration Site DataBase

VIS ID

TVIS30009569

Fusion event

HIV-PEX2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr8

Cytoband

q21.13

Reference genome

Start

End

77908771/76996535 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-4762-3p ; hsa-mir-340-5p ; hsa-mir-4680-3p ; hsa-mir-5187-3p ; hsa-mir-5590-3p ; hsa-mir-4427 ; hsa-mir-142-5p ; hsa-mir-4318 ; hsa-mir-8060 ; hsa-mir-493-3p ; hsa-mir-570-5p ; hsa-mir-548ba ; hsa-mir-548ai ; hsa-mir-548ag ; hsa-mir-196a-3p ; hsa-mir-661 ; hsa-mir-769-5p ; hsa-mir-4786-5p ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-939-3p ; hsa-mir-6072 ; hsa-mir-6891-3p ; hsa-mir-6849-3p ; hsa-mir-3065-5p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-6741-5p ; hsa-mir-6842-3p ; hsa-mir-6514-3p ; hsa-mir-188-3p ; hsa-mir-8074 ; hsa-mir-143-5p ; hsa-mir-5787 ; hsa-mir-4505 ; hsa-mir-3652 ; hsa-mir-4430 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-5589-5p ; hsa-mir-6847-3p ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-6499-3p ; hsa-mir-6776-5p ; hsa-mir-5693 ; hsa-mir-135b-5p ; hsa-mir-135a-5p ; hsa-mir-889-5p ; hsa-mir-656-3p

Nearest miRNA

hsa-mir-124-1/Upstream/29685; hsa-mir-10400/Downstream/2335653;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/313910, chr8-CpG: 78/Downstream/3361

Upstream sequence

CTTTAGGATGGTACCACAGGTCACACAGATGGGGCTACCTTAAAGAGGCCAAGTACTAAGAGTATAGGCACAAACTATGGGAAAAACACTAGTGCGAGTA

Downstream sequence

TGAACAGGACACACATGAAATGTATGAGCAGCTAGATGTTTAAATACTCTATAAATAATTTAAAAATGGGCTTTAGAATCTAATTGCTTAAGAATTCTAA