Basic Information
VIS ID
TVIS30009570
Fusion event
HIV-PKIA-AS1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
79465514/78553279 (Hg38)
End
79465514/78553279 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
PKIA-AS1
Nearest miRNA
hsa-mir-124-1/Upstream/1586429; hsa-mir-10400/Downstream/778909;
Nearest TSS
ENST00000518652/Upstream/36924; ENST00000518467/Downstream/5214;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/36760, chr8-CpG: 37/Downstream/112749
Upstream sequence
TAAAAGCACTGTCTTGCTTCATTTAGTAATAATGGAAACAAATCTGGTGCATGTGGGCTGTCTTGATATAATGCATAAACACCTAAAAAGTTCAGTCAGG
Downstream sequence
GAATAAACTCagggtcccgtctgtggaggcagagaatcccggcttggatcctagtcctatttctggctttatcaaatcacttacccactctagacctcat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate