Basic Information
VIS ID
TVIS30009577
Fusion event
HIV-chr8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
87093999/86081770 (Hg38)
End
87093999/86081770 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12123/Upstream/5840297; hsa-mir-10400/Downstream/5123715;
Nearest TSS
ENST00000518652/Upstream/7881; ENST00000285393/Downstream/3082;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/11953, chr8-CpG: 100/Downstream/260545
Nearby gene
PSKH2(No orient, 12148)
Upstream sequence
ttgggtgccatggctcacgcctataattccaacatgttcggaggccaaagcaggaggattacttgcatccaggagttcaagaccagcctgggaaacatag
Downstream sequence
cgagaccctgtctctacaaaaaatttaaaaattagctgggcatggtggttgatgcctgtagtcccagctacttgggagggtgaggtgggaggatcgtttg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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