Basic Information
VIS ID
TVIS30009578
Fusion event
HIV-chr8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
87270308/86258079 (Hg38)
End
87270308/86258079 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12123/Upstream/6016606; hsa-mir-10400/Downstream/4947406;
Nearest TSS
ENST00000518652/Upstream/27698; ENST00000523863/Downstream/63067;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/188262, chr8-CpG: 100/Downstream/84236
Nearby gene
SLC7A13(No orient, 27704)
Upstream sequence
TAAGCTAAAGTTAAACAAAAGGCCTAGCGAGCCTAAATTGAAGTAGTAGGAAAAGAGTAATACAAAAGTTTCAGAAAGAGCTATTTATTTTGTAACTAAG
Downstream sequence
GAAAATAAAATGCTATTTATTCCATTCTTTGAATAAATGTTAACTGACCATCTTGAATCAGCAAAATAAACAGTGTTAAACTGCAACTAACTCACCTAGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate