VISDB Viral Integration Site DataBase

VIS ID

TVIS30009579

Fusion event

HIV-RMDN1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr8

Cytoband

q21.3

Reference genome

Start

End

87499230/86487001 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-17-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6739-5p ; hsa-mir-6733-5p ; hsa-mir-3153 ; hsa-mir-4668-5p ; hsa-mir-3121-5p ; hsa-mir-501-5p ; hsa-mir-323a-3p ; hsa-mir-7849-3p ; hsa-mir-500a-5p ; hsa-mir-186-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-7977 ; hsa-mir-30c-1-3p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-124-3p ; hsa-mir-34b-3p ; hsa-mir-3664-3p ; hsa-mir-3675-3p ; hsa-mir-3714 ; hsa-mir-3910 ; hsa-mir-3975 ; hsa-mir-4470 ; hsa-mir-4662a-5p ; hsa-mir-4684-5p ; hsa-mir-4695-5p ; hsa-mir-4722-5p ; hsa-mir-4768-3p ; hsa-mir-4786-5p ; hsa-mir-506-3p ; hsa-mir-510-5p ; hsa-mir-548as-3p ; hsa-mir-6771-3p ; hsa-mir-6808-5p ; hsa-mir-6849-3p ; hsa-mir-6893-5p ; hsa-mir-769-5p ; hsa-mir-940 ; hsa-mir-942-3p

Nearest miRNA

hsa-mir-12123/Upstream/6245528; hsa-mir-10400/Downstream/4718484;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/143784, chr8-CpG: 47/Downstream/21343

Upstream sequence

TTTGCATTCAAATTCTCTGAACATTTGCCCTACAAAACTCAACATATTAACTTGAGGTTTGGCCTCACTGGCACTGTGTTTCAAATAACTCACTCAGTAG

Downstream sequence

TTCATACAGTATCATAAAATACATAAATTTTATAGACAGGGTCATGTTCTAAAAATACAAAactgctgaatccctagtctcaaatacagcacctgacaca