Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene868697878676593586818558867824428678274186817861
Basic Information
VIS ID
TVIS30009580
Fusion event
HIV-chr8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
87830089/86817861 (Hg38)
End
87830089/86817861 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12123/Upstream/6576388; hsa-mir-10400/Downstream/4387624;
Nearest TSS
ENST00000518652/Upstream/51926; ENST00000517748/Downstream/48581;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/302817, chr8-CpG: 25/Downstream/1056082
Nearby gene
CNBD1(No orient, 48587)
Upstream sequence
TGAGGGGATTGGAAGCTTGGGAGTTATTATAGTCATTGATCAATGTAGTCAAGAGTTTTTCCATAAAAGAGCAGCTTTTGACTGGTTTCATTACTAAACT
Downstream sequence
TTGTTTCTATGTAGGGAGCAATGCCTTAATCCTTTTCTTTGACTGTCACTTTGAAACACATCAATTGAAAAATATTTTTTTGGAGTCCCTCCATGTTATA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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