Basic Information
VIS ID
TVIS30009581
Fusion event
HIV-chr8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
90869109/89856881 (Hg38)
End
90869109/89856881 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12123/Upstream/9615408; hsa-mir-10400/Downstream/1348604;
Nearest TSS
ENST00000518652/Upstream/76793; ENST00000520659/Downstream/44978;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/98652, chr8-CpG: 137/Downstream/45088
Nearby gene
OSGIN2(No orient, 44987)
Upstream sequence
tggactggcattattttcattttatagaagaagaaactaagATTGTAAAAGTAGGATGATGgtggcagccccagatcttctgtgcaggtagggcgttggc
Downstream sequence
atggcaacctggccacaaagctggagaactggttttgtagacaccattgcatagcaggtacactatttcactcagattggatgGAGCTTGAGGCTGCTGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate