Basic Information
VIS ID
TVIS30009585
Fusion event
HIV-chr8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
98653993/97641765 (Hg38)
End
98653993/97641765 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA8B
Nearest miRNA
hsa-mir-12123/Upstream/2568769; hsa-mir-10400/Downstream/751880;
Nearest TSS
ENST00000518652/Upstream/363801; ENST00000522313/Downstream/2414;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/17089, chr8-CpG: 127/Downstream/2060
Nearby gene
MTDH(No orient, 2414)
Nearest cancer related gene
MTDH(OG, No orient, 2414)
Upstream sequence
tttgataaattttgaaatatatgcccataaaaccattaccacaatcaaaataatgcacatatccatcacacccatgggtttcctggtaccctttagtaat
Downstream sequence
ccctccctctctcccatttctccttcctcccaccaccctccacccccatccccaaggaatcactgatttgctttgtcactatagattagtttgcattttc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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