Basic Information
VIS ID
TVIS30009589
Fusion event
HIV-RNF19A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
101281465/100269237 (Hg38)
End
101281465/100269237 (Hg38)
Orient
-
Location type
Intronic
Target gene
RNF19A
miRNAs that regulate target gene
hsa-mir-29c-3p ; hsa-mir-33a-5p ; hsa-mir-615-3p
Nearest miRNA
hsa-mir-12123/Upstream/732376; hsa-mir-10400/Downstream/113526;
Nearest TSS
ENST00000518652/Upstream/317; ENST00000519566/Downstream/5797;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/55586, chr8-CpG: 134/Downstream/40103
Upstream sequence
ttattttatattatattttattatttaatctatattatattaACAAGATACTGATAACTGAAATTCAGGTTAAAAATTTATCCCTAGTCTTCCATTACCC
Downstream sequence
TCATACCCTTAAGTCAGTTTAATAGTAAATTAATGCAAAACATGCATATTTTTAGGCATCAATTATCTGATTATATCACAAACTCACTCTGTAGCCTAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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