Basic Information
VIS ID
TVIS30009591
Fusion event
HIV-chr8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
102122345/101110117 (Hg38)
End
102122345/101110117 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12123/Upstream/407093; hsa-mir-10400/Downstream/1015315;
Nearest TSS
ENST00000518652/Upstream/58063; ENST00000518090/Downstream/16041;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/29207, chr8-CpG: 63/Downstream/16248
Nearby gene
FLJ42969(No orient, 33866)
Upstream sequence
cctgagacatttttagaacatgtccagttgggtggctcgcagacccacctccccctaggattctgagtcccttggcctgggatgcagcccagtcattggt
Downstream sequence
atttttgattgtgatgtgccaccagggttgagGTGCTCTGGCCTAAGGGGACTCGGGTGTCGAGTTAACCCCTTCTTGTAAAGTGCTCCTTGGCCAGGTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate