Basic Information
VIS ID
TVIS30009603
Fusion event
HIV-EBAG9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
110575148/109562919 (Hg38)
End
110575148/109562919 (Hg38)
Orient
+
Location type
Intronic
Target gene
EBAG9
miRNAs that regulate target gene
hsa-mir-375 ; hsa-mir-8067 ; hsa-mir-6508-5p ; hsa-mir-4538 ; hsa-mir-4453 ; hsa-mir-4661-5p ; hsa-mir-4704-5p ; hsa-mir-629-3p ; hsa-mir-4279 ; hsa-mir-5588-5p ; hsa-mir-3622b-5p ; hsa-mir-4799-3p ; hsa-mir-4720-5p ; hsa-mir-892b ; hsa-mir-193a-3p ; hsa-mir-193b-3p
Nearest miRNA
hsa-mir-12123/Upstream/5078454; hsa-mir-10400/Downstream/3080574;
Nearest TSS
ENST00000518652/Upstream/12094; ENST00000499579/Downstream/17618;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/22505, chr8-CpG: 51/Downstream/81647
Upstream sequence
aatctgaaatgctccaatgagaatttcctttgagcatcaggtaggccctcagaaagtttcagattttggagcatttcagatttcggatttttgtatttgg
Downstream sequence
gatgctcagccCTTATATTATTTCAGCTAGTAACCAGGTCAAAACTTCGTTATCTTACTTGTTTATAACCTAGCCAGCCCTTTATAATTTTTTCTCTACC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate