Basic Information
VIS ID
TVIS30009604
Fusion event
HIV-LINC01608 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
112030516/111018287 (Hg38)
End
112030516/111018287 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LINC01608
Nearest miRNA
hsa-mir-12123/Upstream/6533822; hsa-mir-10400/Downstream/1625206;
Nearest TSS
ENST00000518652/Upstream/251424; ENST00000521904/Downstream/9105;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/1042444, chr8-CpG: 21/Downstream/2414310
Upstream sequence
GTATAACTTAACAATCAAAGACAATTGAGCACACTGCACTTACAAAAGAGTATTTTAGTATCTTAGTGCTTAGGTGACTAACATTTATATAAATAAGAGT
Downstream sequence
GAAGTGTAAGAAAACAAGAAGATTTGAAAAATTCTAAATATTTGATAGAGTTTCTCTGAGAGAGGGAGCTTATTTTGTTTAGTGTGCTTTATACGTTACT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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