Basic Information
VIS ID
TVIS30009608
Fusion event
HIV-chr8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.11
Reference genome
GRCh37/hg19
Start
117916326/116904087 (Hg38)
End
117916326/116904087 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12123/Upstream/29287; hsa-mir-10400/Downstream/2421084;
Nearest TSS
ENST00000518652/Upstream/29221; ENST00000523536/Downstream/34112;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/29007, chr8-CpG: 45/Downstream/34146
Nearby gene
RAD21-AS1(No orient, 27219)
Upstream sequence
ctccttactgtgctcaaggaaattaggatagacttattaccatcagatagactatgcattctcttatttatatgtttattgtctgatctccccttacccc
Downstream sequence
tgtgcacataccagcaaattatctctatcatgatggagatcttttattttatacttgctgctacatcccccatgttctagaacagttgcaggtactcaat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate