Basic Information
VIS ID
TVIS30009612
Fusion event
HIV-MTBP integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.12
Reference genome
GRCh37/hg19
Start
121514151/120501911 (Hg38)
End
121514151/120501911 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA8C ; FRA8E
Target gene
MTBP
Nearest miRNA
hsa-mir-12123/Upstream/1176646; hsa-mir-10400/Downstream/2713877;
Nearest TSS
ENST00000518652/Upstream/13750; ENST00000519556/Downstream/16792;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/56494, chr8-CpG: 121/Downstream/309264
Upstream sequence
AAGAACAGAAACTGTCCCTTTAGGTTTTCATTGAAAATCCCAATATTAACAGCAATCTCAATATAGTTCACTGCAGTGTATTATCTAGAAAGATAAGCAC
Downstream sequence
ACTCTTACACATAATATTTGATTAGTAGAAAATAACACTGCATGTTAGTGATTTGAAGGTGTGTATGTTTAACCATCTTGGTTTCTGCGAGAGAACATCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate