Basic Information
VIS ID
TVIS30009619
Fusion event
HIV-TBC1D31 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.13
Reference genome
GRCh37/hg19
Start
124148362/123136122 (Hg38)
End
124148362/123136122 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA8C ; FRA8E
Target gene
TBC1D31
miRNAs that regulate target gene
hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-615-3p ; hsa-let-7e-5p
Nearest miRNA
hsa-mir-12123/Upstream/3810857; hsa-mir-10400/Downstream/79666;
Nearest TSS
ENST00000518652/Upstream/8272; ENST00000523819/Downstream/42838;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/63044, chr8-CpG: 31/Downstream/20677
Upstream sequence
acatatacttgtttttctgaactgttacagacgtgatgctcctttacctctaaatacttcagtgtatatttcctaagactaaggaatcctcttatataac
Downstream sequence
caccgtacagttctcaaaatcagaaattaacataagatgatctgatatataaaccttattcagatttgatccattgtatccaaaatgtcctttagagcaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate