Basic Information
VIS ID
TVIS30009628
Fusion event
HIV-TATDN1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.13
Reference genome
GRCh37/hg19
Start
125506190/124493949 (Hg38)
End
125506190/124493949 (Hg38)
Orient
-
Location type
Exonic
Fragile sites / regions
FRA8C ; FRA8E
Target gene
TATDN1
Nearest miRNA
hsa-mir-12123/Upstream/1145819; hsa-mir-10400/Downstream/14566;
Nearest TSS
ENST00000518652/Upstream/5439; ENST00000518008/Downstream/10749;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/18568, chr8-CpG: 34/Downstream/45021
Upstream sequence
ATTTCTGTCTTTTAAGCAGTGCCCACTTTCCCACTTCTTTTTGGTAGGAAATGCAGTTCTTATATATTTTGATCCAGCATGTGTACTTTTGACTCCACAC
Downstream sequence
CAAGGTGCATCTAGTTAAGCAAAGAAAGTGTCTCGTAAGGGGTTTACATTTTTAAAAATTTTTTATGACCATTATCTAATATATAACCTCTAAATGATAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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