Basic Information
VIS ID
TVIS30009636
Fusion event
HIV-chr8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.21
Reference genome
GRCh37/hg19
Start
128646825/127634580 (Hg38)
End
128646825/127634580 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12123/Upstream/2812522; hsa-mir-10400/Downstream/161382;
Nearest TSS
ENST00000518652/Upstream/152441; ENST00000641252/Downstream/99387;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/318687, chr8-CpG: 17/Downstream/99424
Nearby gene
CARNS1(No orient, 66028)
Upstream sequence
agggggtacaagtgcaggtttcttacatgcacatattgcatatgggtgaagtttgggcttttcgtgtaaccctcatgcaaataataaacattgttcccaa
Downstream sequence
taggtaatttttcaaccctcactctcctccaacctttccaccttttgttatctccaatgtccattattAAAGGTGGGAAATGTTTAGATTCAAAGTGGAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate