Basic Information
VIS ID
TVIS30009640
Fusion event
HIV-chr8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.21
Reference genome
GRCh37/hg19
Start
129665649/128653403 (Hg38)
End
129665649/128653403 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1204/Upstream/503215; hsa-mir-10400/Downstream/830654;
Nearest TSS
ENST00000518652/Upstream/556884; ENST00000519048/Downstream/312598;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/803425, chr8-CpG: 122/Downstream/1285723
Nearby gene
LINC00824(No orient, 88724)
Upstream sequence
gctctcttaagttttatttcagctgtaacattggtgattctatTGTTTGAAATCAAGGATCATTTCTTATAAATTTCTATGAAAGCTGCAATATGCTCTG
Downstream sequence
CAACAGTCCTCAGCCAGCACAAACTCGATACAAATAAGTATGAATTTGtaggcttacaaaatctcagagttcaaagggactgtcaaggtcgtagagctca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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