Basic Information
VIS ID
TVIS30009642
Fusion event
HIV-CCDC26 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.21
Reference genome
GRCh37/hg19
Start
130388421/129376175 (Hg38)
End
130388421/129376175 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
CCDC26
Nearest miRNA
hsa-mir-1204/Upstream/1225987; hsa-mir-10400/Downstream/107882;
Nearest TSS
ENST00000518652/Upstream/134925; ENST00000519048/Downstream/39774;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/1526197, chr8-CpG: 122/Downstream/562951
Upstream sequence
tattagattgcagtcataattttctagaatatcctctatgtttccatcTCCATGACCAAAGCCTGCTTTCTGCAGTAAAAAACTTTAGCAGAATTTGAAT
Downstream sequence
CCACCAGAACAATGGTGTTTCTCTTactccagccccctctagccttcctgtgtcacctaaggtgggaaaaaggaagctaagaaacacttgaaaggtcaca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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