VISDB Viral Integration Site DataBase

VIS ID

TVIS30009650

Fusion event

HIV-ZNF623 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr8

Cytoband

q24.3

Reference genome

Start

End

144721445/143639275 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-4282 ; hsa-mir-5197-5p ; hsa-mir-5583-3p ; hsa-mir-4725-5p ; hsa-mir-577 ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-8081 ; hsa-mir-3978 ; hsa-mir-627-5p ; hsa-mir-937-5p ; hsa-mir-5702 ; hsa-mir-8076 ; hsa-mir-3688-3p ; hsa-mir-4511 ; hsa-mir-3133 ; hsa-mir-1273a ; hsa-mir-548au-3p ; hsa-mir-449b-5p ; hsa-mir-449a ; hsa-mir-34c-5p ; hsa-mir-34a-5p ; hsa-mir-8080 ; hsa-mir-665 ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-6788-5p ; hsa-mir-450a-1-3p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-4284 ; hsa-mir-24-3p ; hsa-mir-342-3p ; hsa-mir-6832-3p ; hsa-mir-1228-3p ; hsa-mir-4433b-3p ; hsa-mir-1304-5p ; hsa-mir-6765-5p ; hsa-mir-623 ; hsa-mir-6894-5p ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-6089 ; hsa-mir-5008-5p ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-6780b-3p ; hsa-mir-4780 ; hsa-mir-4459 ; hsa-mir-6866-3p ; hsa-mir-188-5p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-4661-3p ; hsa-mir-6808-5p ; hsa-mir-103a-3p ; hsa-mir-107 ; hsa-mir-1184 ; hsa-mir-4274 ; hsa-mir-4310 ; hsa-mir-7157-5p ; hsa-mir-9500 ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-4279 ; hsa-mir-4320 ; hsa-mir-4722-3p ; hsa-mir-4740-3p ; hsa-mir-498 ; hsa-mir-5089-5p ; hsa-mir-5571-5p ; hsa-mir-619-5p ; hsa-mir-6506-5p ; hsa-mir-6727-3p ; hsa-mir-6747-3p ; hsa-mir-6778-3p

Nearest miRNA

hsa-mir-1204/Upstream/1462857; hsa-mir-10400/Downstream/93808;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/2647, chr8-CpG: 48/Downstream/45056

Upstream sequence

gccaccatgtccggccCACCCCCTTTTTAAtttatttttatttttatttatttatttttgagatggagtttcgctcttgttgcccaggctggagtgcaat

Downstream sequence

ggcgtgatctcagctcactgcagcctccacctccgcctcctgggttccagtcattctcccgtctccgcctcccaagtagctgggattacaagcatgtgcc