Basic Information
VIS ID
TVIS30009651
Fusion event
HIV-chr8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
144764604/143682434 (Hg38)
End
144764604/143682434 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA8D
Nearest miRNA
hsa-mir-1204/Upstream/1506016; hsa-mir-10400/Downstream/50649;
Nearest TSS
ENST00000518652/Upstream/32774; ENST00000532571/Downstream/2018;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/45806, chr8-CpG: 48/Downstream/1897
Nearby gene
ZNF707(No orient, 2018)
Upstream sequence
cttggctttcaggctttaagctgttttcagcgtcgaggtggaggtttcactggggacctgcccccatttggctgggcatttggctgcctgcctcctgtcg
Downstream sequence
ctatcacTCCTTTACTAGtgaggactaaactgatctttttctctcttgctcaagttcttatctaaagggcctggggagtctgccctacaaaccataaaat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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