VISDB Viral Integration Site DataBase

VIS ID

TVIS30009656

Fusion event

HIV-PLEC integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr8

Cytoband

q24.3

Reference genome

Start

End

145035548/143961380 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-7-5p ; hsa-mir-124-3p ; hsa-mir-16-5p ; hsa-mir-769-3p ; hsa-mir-615-3p ; hsa-mir-6796-5p ; hsa-mir-7109-5p ; hsa-mir-3978 ; hsa-mir-6790-5p ; hsa-mir-6742-5p ; hsa-mir-4658 ; hsa-mir-4472 ; hsa-mir-4447 ; hsa-mir-3151-5p ; hsa-mir-491-5p ; hsa-mir-4792 ; hsa-mir-6842-5p ; hsa-mir-7110-5p ; hsa-mir-6752-5p ; hsa-mir-6885-5p ; hsa-mir-328-5p ; hsa-mir-6887-5p ; hsa-mir-6795-5p ; hsa-mir-3659 ; hsa-mir-4487 ; hsa-mir-574-5p ; hsa-mir-558 ; hsa-mir-3160-3p ; hsa-mir-875-3p ; hsa-mir-6835-3p ; hsa-mir-1266-5p ; hsa-mir-127-5p ; hsa-mir-1293 ; hsa-mir-1827 ; hsa-mir-1909-3p ; hsa-mir-3174 ; hsa-mir-323a-5p ; hsa-mir-3612 ; hsa-mir-363-5p ; hsa-mir-3664-3p ; hsa-mir-4257 ; hsa-mir-4433a-3p ; hsa-mir-4433b-3p ; hsa-mir-4443 ; hsa-mir-4459 ; hsa-mir-4483 ; hsa-mir-4518 ; hsa-mir-4651 ; hsa-mir-4768-3p ; hsa-mir-518a-5p ; hsa-mir-527 ; hsa-mir-608 ; hsa-mir-650 ; hsa-mir-6722-3p ; hsa-mir-6745 ; hsa-mir-6782-5p ; hsa-mir-6804-5p ; hsa-mir-6808-5p ; hsa-mir-6847-5p ; hsa-mir-6854-5p ; hsa-mir-6880-5p ; hsa-mir-6893-5p ; hsa-mir-7847-3p ; hsa-mir-940

Nearest miRNA

hsa-mir-1204/Upstream/16101; hsa-mir-10400/Downstream/95941;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/7196, chr8-CpG: 401/Downstream/11745

Upstream sequence

aatggcgcgatctcagctcactgcaacctccgcctcccaggttcaagtgattctcctgcctcagcctcctgcgtagcggggattacaggcgtgcaccacc

Downstream sequence

acaccctgctaatttttgtatttttagtagagacagcgtttcaccatgttggttaggctggtctcgtactcctgacctcgtgatctgcccaactcggccc