Basic Information
VIS ID
TVIS30009660
Fusion event
HIV-chr8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
145083892/144009724 (Hg38)
End
145083892/144009724 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA8D
Nearest miRNA
hsa-mir-1204/Upstream/64445; hsa-mir-10400/Downstream/47597;
Nearest TSS
ENST00000518652/Upstream/17550; ENST00000447830/Downstream/2690;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/18506, chr8-CpG: 22/Downstream/37006
Nearby gene
SPATC1(No orient, 2690)
Upstream sequence
gcagtaccccctgcctcctggctcatctccttaacatcctgatctcagcagcacatccaaacctgactccaaatattcactctaaacttggttttccttc
Downstream sequence
caattgggttggtataaccagaggctccaccacccatgccagaagccgcaaggccatcctgccctcgttctcgccttcatcctcacatccaagccaactc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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