Basic Information
VIS ID
TVIS30009661
Fusion event
HIV-SPATC1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
145086550/144012382 (Hg38)
End
145086550/144012382 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA8D
Target gene
SPATC1
Nearest miRNA
hsa-mir-1204/Upstream/67103; hsa-mir-10400/Downstream/44939;
Nearest TSS
ENST00000518652/Upstream/20208; ENST00000447830/Downstream/32;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/21164, chr8-CpG: 22/Downstream/34348
Nearby gene
SPATC1(No orient, 32)
Upstream sequence
ttccaggccgaggcaaggcctgtgtacaggcctggtggcatggagagctgagggtgttagagcagagagggcaaggaagAGGGCACAGCCTCTGACCTCA
Downstream sequence
CAATACCCAGGGCCCACTGGGCCAGCCTTGCAGACTCTGCACCCTCCTTCAGCCCAGGCAAGGCCTGGGGCCCTGGGCAGCCTCCAGGTGCAGTGCCCTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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