Basic Information
VIS ID
TVIS30009670
Fusion event
HIV-ADCK5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
145610162/144384962 (Hg38)
End
145610162/144384962 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA8D
Target gene
ADCK5
Nearest miRNA
hsa-mir-1204/Upstream/67647; hsa-mir-10400/Downstream/9187;
Nearest TSS
ENST00000518652/Upstream/10886; ENST00000607491/Downstream/9275;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/10063, chr8-CpG: 129/Downstream/7098
Upstream sequence
TAATTTTCCCAGCAGTCTGCACGTTCTCCTTGGCTCTAAGCCGTCACGGTTGCATAGACAAGCAGGCCTGTGGAGCTTCCCTGGCAGGGCACAGGGTAGC
Downstream sequence
CTGGGAACACATCCTGGGTGACAGCAGCACCCATGCAGGGGCCCAGGAAGGAGCGCGGGTGAGGAGCATGGCGGGGCCAGTGCACCATGAGAAAAGGCAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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