VISDB Viral Integration Site DataBase

VIS ID

TVIS30009671

Fusion event

HIV-ARHGAP39 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr8

Cytoband

q24.3

Reference genome

Start

End

145855914/144630529 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-186-5p ; hsa-mir-3191-3p ; hsa-mir-92b-5p ; hsa-mir-24-3p ; hsa-mir-7154-3p ; hsa-mir-4756-3p ; hsa-mir-3919 ; hsa-mir-1179 ; hsa-mir-577 ; hsa-mir-3121-3p ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-4533 ; hsa-mir-5004-5p ; hsa-mir-5681a ; hsa-mir-611 ; hsa-mir-3131 ; hsa-mir-9500 ; hsa-mir-4768-3p ; hsa-mir-4428 ; hsa-mir-1249-5p ; hsa-mir-1321 ; hsa-mir-149-3p ; hsa-mir-1908-5p ; hsa-mir-3928-5p ; hsa-mir-425-3p ; hsa-mir-4419a ; hsa-mir-4510 ; hsa-mir-4695-5p ; hsa-mir-4706 ; hsa-mir-4728-5p ; hsa-mir-4739 ; hsa-mir-4749-5p ; hsa-mir-4756-5p ; hsa-mir-6087 ; hsa-mir-6127 ; hsa-mir-6129 ; hsa-mir-6130 ; hsa-mir-6133 ; hsa-mir-663a ; hsa-mir-6731-5p ; hsa-mir-6760-5p ; hsa-mir-6785-5p ; hsa-mir-6787-5p ; hsa-mir-6796-3p ; hsa-mir-6797-5p ; hsa-mir-6806-3p ; hsa-mir-6877-5p ; hsa-mir-6883-5p ; hsa-mir-8085

Nearest miRNA

hsa-mir-10400/Upstream/167990; hsa-mir-6850/Downstream/161402;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/3916, chr8-CpG: 269/Downstream/53762

Upstream sequence

CAGCCCTGGCCCCCAGCTTCTGCAGCCTCCTAAGGGTCTGGTCTCACCCACTGTGCTGAGCACACAAGCCCGACGTGCCTGGTGACATGCATGGTGTCCC

Downstream sequence

CTCTGTCCTTTTTCTAGAACTCCAGTGACCGAGACACTGAGCTTCCTAGACTCTCCTCTTCATTTCCTATTtgctgtggtgtgaatgaatgtcccccgcc