Basic Information
VIS ID
TVIS30009677
Fusion event
HIV-CBWD1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
143724/143724 (Hg38)
End
143724/143724 (Hg38)
Orient
+
Location type
Intronic
Target gene
CBWD1
miRNAs that regulate target gene
hsa-mir-331-3p ; hsa-mir-182-3p ; hsa-mir-99a-5p ; hsa-mir-8081 ; hsa-mir-5089-3p ; hsa-mir-6790-5p ; hsa-mir-4758-5p ; hsa-mir-4658 ; hsa-mir-1238-5p ; hsa-mir-421 ; hsa-mir-505-3p ; hsa-mir-7159-5p ; hsa-mir-1909-5p ; hsa-mir-3065-5p ; hsa-mir-511-3p ; hsa-mir-7-2-3p ; hsa-mir-7-1-3p ; hsa-mir-4272
Nearest miRNA
hsa-mir-1302-9/Upstream/113443; hsa-let-7a-1/Downstream/4706573;
Nearest TSS
ENST00000422679/Upstream/19977; ENST00000469197/Downstream/2416;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/25547, chr9-CpG: 39/Downstream/35127
Upstream sequence
aaatgggcacaagacagggatgccctctctccccactcctattcaacatagtgttggaagttctggccagggcaattaggcaggagaaggaaataaaggg
Downstream sequence
tactcaattaggaaaagaggaagtcaaattgtccctgtttgcagatgacatgattgtatatctagaaaaccccatcgtctcagcccaaaatctccttaag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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