Basic Information
VIS ID
TVIS30009681
Fusion event
HIV-CARM1P1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p24.2
Reference genome
GRCh37/hg19
Start
3012820/3012820 (Hg38)
End
3012820/3012820 (Hg38)
Orient
-
Location type
Intronic
Target gene
CARM1P1
Nearest miRNA
hsa-mir-1302-9/Upstream/2982539; hsa-let-7a-1/Downstream/1837477;
Nearest TSS
ENST00000422679/Upstream/168579; ENST00000452746/Downstream/168769;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/79096, chr9-CpG: 82/Downstream/168186
Nearby gene
PUM3(No orient, 168690)
Upstream sequence
ccactttctggctattttgaatagcgctgttatgaacatttgtgcacaagtatttgtttgaatgcctgtttcaattcttttgggtgtatagctaggaggg
Downstream sequence
gaattgctgggtcatatggtaattctaCTAAAGCTTCATTTTGATTCTGGTCTTGAAAACGTTTCTGAAATGCATGAGATTCATAACCTGCTGCCGGCAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate