Basic Information
VIS ID
TVIS30009689
Fusion event
HIV-chr9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p24.1
Reference genome
GRCh37/hg19
Start
6393705/6393705 (Hg38)
End
6393705/6393705 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-2/Upstream/385801; hsa-let-7a-1/Downstream/12179601;
Nearest TSS
ENST00000422679/Upstream/65301; ENST00000381373/Downstream/19446;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/385376, chr9-CpG: 178/Downstream/18648
Nearby gene
UHRF2(No orient, 19446)
Nearest cancer related gene
UHRF2(TSG, No orient, 19446)
Upstream sequence
gcttgcagtgagccaagatcgtgccattgccttccagcctgggtgacagagtgagatttcatctcaaaacaaaacaaagcaacaacaacaacaaaaacta
Downstream sequence
aagtgtacaattggattgtttgtaacacaaagaaaggattaatgcttgaggtgatggataccccatttaccctgatgtgattattatgcattgtatgcct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate