Basic Information
VIS ID
TVIS30009695
Fusion event
HIV-chr9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p23
Reference genome
GRCh37/hg19
Start
13594472/13594473 (Hg38)
End
13594472/13594473 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-2/Upstream/7586569; hsa-let-7a-1/Downstream/4978833;
Nearest TSS
ENST00000422679/Upstream/147982; ENST00000381010/Downstream/333498;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/271122, chr9-CpG: 242/Downstream/718480
Nearby gene
LINC01235(No orient, 163144)
Upstream sequence
gctacttgggaggctgaggtgggaggattgcttgagtctgggaggcagaggttgcagtgagccaagatcacaccactgcactccagcctgggcaacagag
Downstream sequence
ccagaccctgtatcaaaacaaaataaaaaaaCATTTGGCTCAGTTGTCCCAAggtggtacatgttaaaaagattttaggtgccacatgaatagggcttta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate