VISDB Viral Integration Site DataBase

VIS ID

TVIS30009696

Fusion event

HIV-ZDHHC21 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr9

Cytoband

p22.3

Reference genome

Start

End

14605398/14605400 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-6782-3p ; hsa-mir-888-5p ; hsa-mir-4680-5p ; hsa-mir-4662a-5p ; hsa-mir-562 ; hsa-mir-8054 ; hsa-mir-548l ; hsa-mir-548k ; hsa-mir-548av-5p ; hsa-mir-559 ; hsa-mir-548y ; hsa-mir-548w ; hsa-mir-548o-5p ; hsa-mir-548j-5p ; hsa-mir-548i ; hsa-mir-548h-5p ; hsa-mir-548d-5p ; hsa-mir-548c-5p ; hsa-mir-548bb-5p ; hsa-mir-548b-5p ; hsa-mir-548ay-5p ; hsa-mir-548au-5p ; hsa-mir-548as-5p ; hsa-mir-548ar-5p ; hsa-mir-548aq-5p ; hsa-mir-548ap-5p ; hsa-mir-548am-5p ; hsa-mir-548ak ; hsa-mir-548ae-5p ; hsa-mir-548ad-5p ; hsa-mir-548ab ; hsa-mir-548a-5p ; hsa-mir-744-3p ; hsa-mir-4639-5p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-367-3p ; hsa-mir-363-3p ; hsa-mir-32-5p ; hsa-mir-25-3p ; hsa-mir-548c-3p ; hsa-mir-4539 ; hsa-mir-8485 ; hsa-mir-466 ; hsa-mir-4672 ; hsa-mir-3941 ; hsa-mir-4744 ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-550b-2-5p ; hsa-mir-550a-5p ; hsa-mir-550a-3-5p ; hsa-mir-1271-3p ; hsa-mir-8063 ; hsa-mir-6780b-3p ; hsa-mir-4668-3p ; hsa-mir-129-5p ; hsa-mir-6885-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-1178-3p ; hsa-mir-6873-3p ; hsa-mir-6845-3p ; hsa-mir-6832-3p ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-5571-5p ; hsa-mir-4452 ; hsa-mir-4460 ; hsa-mir-6718-5p ; hsa-mir-140-5p ; hsa-mir-203b-5p

Nearest miRNA

hsa-mir-101-2/Upstream/8597496; hsa-let-7a-1/Downstream/3967906;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/255884, chr9-CpG: 56/Downstream/87632

Nearby gene

ZDHHC21(No orient, 5671)

Upstream sequence

caccattttacacccctagtaacagtacataagggttccaatttccccacatcctcaccaacactatttttttcaaatggccattctaacagttgtgaga

Downstream sequence

taatacctcgttgtaattttgcatctctctattagtgatgttgagcatcccttcacgtacctgttggtcatttgtgtgtcttctttggagaaatatctat