Basic Information
VIS ID
TVIS30009710
Fusion event
HIV-chr9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
30315927/30315929 (Hg38)
End
30315927/30315929 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA9C
Nearest miRNA
hsa-mir-101-2/Upstream/1426974; hsa-let-7a-1/Downstream/2792763;
Nearest TSS
ENST00000422679/Upstream/1645643; ENST00000541043/Downstream/259083;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/489191, chr9-CpG: 62/Downstream/938024
Nearby gene
LINC01242(No orient, 73006)
Upstream sequence
ttagttgttgaggaagatttttatttctctttcaattctgaaggttaatttcactgcctatagaattatagattggcagttttgtttcctgttattctct
Downstream sequence
ttcaacacttcaaatattttactacaccttcctcttgctttcataatctttcatgtaattttgatgaaaagcctaacatatatcctatccttgctcctct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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