Basic Information
VIS ID
TVIS30009714
Fusion event
HIV-DNAJA1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
33030873/33030875 (Hg38)
End
33030873/33030875 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA9C
Target gene
DNAJA1
miRNAs that regulate target gene
hsa-mir-30a-5p ; hsa-mir-16-5p ; hsa-mir-193b-3p ; hsa-mir-656-3p ; hsa-mir-921 ; hsa-mir-1910-5p ; hsa-mir-5697 ; hsa-mir-6073 ; hsa-mir-6504-3p ; hsa-mir-6837-3p ; hsa-mir-335-5p ; hsa-mir-155-3p ; hsa-mir-107 ; hsa-mir-103a-3p ; hsa-mir-4667-3p ; hsa-mir-6887-3p ; hsa-mir-3614-3p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-6771-3p ; hsa-mir-582-5p ; hsa-mir-101-3p ; hsa-mir-3174 ; hsa-mir-6794-3p ; hsa-mir-6758-3p ; hsa-mir-205-5p ; hsa-mir-1238-3p ; hsa-mir-670-3p ; hsa-mir-5006-5p ; hsa-mir-3972 ; hsa-mir-1202 ; hsa-mir-1283 ; hsa-mir-6891-3p ; hsa-mir-6072 ; hsa-mir-4282 ; hsa-mir-4317
Nearest miRNA
hsa-mir-101-2/Upstream/4141920; hsa-let-7a-1/Downstream/77817;
Nearest TSS
ENST00000422679/Upstream/5589; ENST00000465677/Downstream/3385;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/5076, chr9-CpG: 37/Downstream/13372
Upstream sequence
TCAATCAGAAATAACTCTTAGCAGCTTAGTAAATAATGTTCTTTTATCCAGACATAATTTTGCACATTGGTATATTACTAATACAGAATATATTAGGAAT
Downstream sequence
CTCCTCATTTAATATAACAGGATCATCTTTTGAAATCTGTGGTCCTGTAAATGATTGAATAGTGTTCCAAACTTAATTCTCTCCTGTTAAACCATAGTTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate