Basic Information
VIS ID
TVIS30009717
Fusion event
HIV-LOC105376020 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
33406115/33406117 (Hg38)
End
33406115/33406117 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105376020
Nearest miRNA
hsa-mir-101-2/Upstream/297352; hsa-let-7a-1/Downstream/61752;
Nearest TSS
ENST00000422679/Upstream/3260; ENST00000496561/Downstream/36992;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/115112, chr9-CpG: 41/Downstream/41331
Nearby gene
AQP7(No orient, 3598)
Upstream sequence
ccatgttggctaggctggtctcaaacttctgatctcaggtgatccacccgcctcgggctcccagagtgctgggattacaggcgtgagccaccgcacttgg
Downstream sequence
tcTAAAAtacttttttcattcaaacatttgttaagaatatctttctatgacagtaggtccatgtccacctcatgcctgttgtacagcattccacctgatg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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