Basic Information
VIS ID
TVIS30009721
Fusion event
HIV-PHF24 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
34951487/34951490 (Hg38)
End
34951487/34951490 (Hg38)
Orient
+
Location type
Intronic
Target gene
PHF24
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-mir-101-2/Upstream/1483555; hsa-let-7a-1/Downstream/656604;
Nearest TSS
ENST00000422679/Upstream/55712; ENST00000486477/Downstream/6118;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/141258, chr9-CpG: 93/Downstream/6230
Nearby gene
PHF24(No orient, 5997)
Upstream sequence
tctggattatacagtgggctctataatcataagtgtctttataagagaaagattcaaagaacaagatgtaacaatagaagtcagagtgatgtgatgtgag
Downstream sequence
aaagattcaaccatctattgctggctttgaagacagaggaaggggccacaagccaaataatacaggtggcctctagaagctggaaaagacaaggaatggg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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