VISDB Viral Integration Site DataBase

VIS ID

TVIS30009722

Fusion event

HIV-PIGO integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr9

Cytoband

p13.3

Reference genome

Start

End

35087433/35087436 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-92b-3p ; hsa-mir-128-1-5p ; hsa-mir-128-2-5p ; hsa-mir-378a-5p ; hsa-mir-1200 ; hsa-mir-3653-5p ; hsa-mir-106b-5p ; hsa-mir-20a-5p ; hsa-mir-744-3p ; hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-513a-5p ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-143-5p ; hsa-mir-5698 ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-6499-3p ; hsa-mir-5693 ; hsa-mir-764 ; hsa-mir-552-3p ; hsa-mir-4781-3p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-8057 ; hsa-mir-640 ; hsa-mir-6131 ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-3663-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-212-5p ; hsa-mir-3934-5p ; hsa-mir-125a-3p ; hsa-mir-6869-5p ; hsa-mir-4279 ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-1976 ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-544b ; hsa-mir-4324 ; hsa-mir-660-3p ; hsa-mir-5089-5p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-512-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-224-5p ; hsa-mir-1227-5p ; hsa-mir-6802-3p ; hsa-mir-6845-5p ; hsa-mir-6762-5p ; hsa-mir-6754-3p ; hsa-mir-412-3p ; hsa-mir-1207-3p ; hsa-mir-4640-3p ; hsa-mir-93-5p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-17-5p ; hsa-mir-1227-3p ; hsa-mir-1273e ; hsa-mir-25-5p ; hsa-mir-33b-3p ; hsa-mir-371a-3p ; hsa-mir-371b-3p ; hsa-mir-377-5p ; hsa-mir-4252 ; hsa-mir-4459 ; hsa-mir-4537 ; hsa-mir-455-3p ; hsa-mir-4695-5p ; hsa-mir-515-3p ; hsa-mir-519e-3p ; hsa-mir-6086 ; hsa-mir-6087 ; hsa-mir-6516-5p ; hsa-mir-658 ; hsa-mir-665 ; hsa-mir-6840-3p

Nearest miRNA

hsa-mir-101-2/Upstream/1619501; hsa-let-7a-1/Downstream/520658;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/7220, chr9-CpG: 48/Downstream/8719

Nearby gene

PIGO(No orient, 1252)

Upstream sequence

aggtgcacaccaccacacctggctaatttttgtatttttagtagagatggggttttgccatgttggccaggctggtctcaaactcctgacctcaggtgat

Downstream sequence

ccacccgccttggctccccaaagtgctgagattacaggcatgaggcaccacacccagcTGAACCATACTTTTCATCATCTTACTATTTGGCATCTGTAAC