Basic Information
VIS ID
TVIS30009723
Fusion event
HIV-FAM214B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
35112440/35112443 (Hg38)
End
35112440/35112443 (Hg38)
Orient
-
Location type
Intronic
Target gene
FAM214B
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-6818-3p ; hsa-mir-593-3p ; hsa-mir-6895-3p ; hsa-mir-6876-3p ; hsa-mir-626 ; hsa-mir-6845-3p ; hsa-mir-136-5p ; hsa-mir-1182
Nearest miRNA
hsa-mir-101-2/Upstream/1644508; hsa-let-7a-1/Downstream/495651;
Nearest TSS
ENST00000422679/Upstream/51; ENST00000485086/Downstream/3407;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/705, chr9-CpG: 51/Downstream/3261
Upstream sequence
GGAGACAGAGCATACAGGGAAGTGGGATAGGAGAGCTTCTGCCCAGAATGGGGGAAATGAGCCCAACTCTTGTGATGGAGCTCAACCCCATGACTCACAG
Downstream sequence
CTCCCTCAAAACTATCCACCCTCCCACTGAGTCACTGGGCCCCAGCCCAGTTCAGACCCAGTCAAATCAAATGGCAGCAGAACCGGCATCCCTAACCCTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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