Basic Information
VIS ID
TVIS30009731
Fusion event
HIV-ZCCHC7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
37212925/37212928 (Hg38)
End
37212925/37212928 (Hg38)
Orient
+
Location type
Intronic
Target gene
ZCCHC7
miRNAs that regulate target gene
hsa-mir-365a-3p
Nearest miRNA
hsa-mir-101-2/Upstream/319397; hsa-let-7a-1/Downstream/3716082;
Nearest TSS
ENST00000422679/Upstream/67996; ENST00000463625/Downstream/71235;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/91940, chr9-CpG: 44/Downstream/209643
Upstream sequence
ATATCTTTCTCCATGCTTGTCCAAAGAACACATGCACAGTAGTTTTGGGGTCATTGTTTTTTTTACAGACTTCTCTGAGACATACCTTTTTCACTTTTAC
Downstream sequence
TATGTAAGTTTCCCTGGTTGATAGAGGGCTTGACTTTTTAATAGCTGTAATTATATTCTATAGAATAGACAGAGTGGATGTTCGGAATTTACTGAACTCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate