Basic Information
VIS ID
TVIS30009734
Fusion event
HIV-chr9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
37375998/37376001 (Hg38)
End
37375998/37376001 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-2/Upstream/482470; hsa-let-7a-1/Downstream/3553009;
Nearest TSS
ENST00000422679/Upstream/48681; ENST00000487399/Downstream/8433;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/255013, chr9-CpG: 44/Downstream/46570
Nearby gene
ZCCHC7(No orient, 17853)
Upstream sequence
aaccccgtctctattaaaaacacaaaaattagccgggcgtggtggtgggcacctgtaatcccagctactcaggaggctgaggtgggagaatcacttgaac
Downstream sequence
ccaggaggtggaggttgcagtgagccaagatcacaccactgcactccagcctgggcaatagaatgagagttcatctcaaaaaaaaaaaaaaaaaaaaaaG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate