Basic Information
VIS ID
TVIS30009735
Fusion event
HIV-FRMPD1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
37738431/37738434 (Hg38)
End
37738431/37738434 (Hg38)
Orient
-
Location type
Intronic
Target gene
FRMPD1
Nearest miRNA
hsa-mir-101-2/Upstream/844903; hsa-let-7a-1/Downstream/3190576;
Nearest TSS
ENST00000422679/Upstream/68656; ENST00000540616/Downstream/15369;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/87022, chr9-CpG: 30/Downstream/15224
Upstream sequence
tttgtttttatttttattttttttagaggcagtctctctctgtcacccaggctggagtgcagtggtgcaatcttggctcactgcagcctccacctcctgg
Downstream sequence
gttcaagtgattctcctgcctcagcctcccaagtagctgagattacagacacctgccaccacgcccggctaatttttgtacattagtagagatggggttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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