Basic Information
VIS ID
TVIS30009738
Fusion event
HIV-FRG1HP integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
68740346/41006123 (Hg38)
End
68740346/41006123 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
FRG1HP
Nearest miRNA
hsa-mir-101-2/Upstream/77031; hsa-let-7a-1/Downstream/227632;
Nearest TSS
ENST00000422679/Upstream/216847; ENST00000613309/Downstream/67587;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/13388, chr9-CpG: 83/Downstream/67764
Upstream sequence
tgttgaattgatccctttaccattatgtaatgaccttctttgtctcttttgatctttgttggttgaaagtctgttttatcagagactaggattgcaaccc
Downstream sequence
ctgccttttttttttgttttccatttgcttggtagatcttcctccatccttttatgttgagcctgtgtgtgcctctgcacatgagatgggtttcctgaat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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